DEPARTMENT OF HUMAN GENETICS / UNIVERSITY OF CHICAGOhttp://genes.uchicago.eduhttp://www.uchicago.edushapeimage_1_link_0shapeimage_1_link_1
Gilad Labhttp://giladlab.uchicago.edushapeimage_2_link_0

Supplemental Data for Perry et al. 2010


These are the supplementary data and code for Perry G, Marioni JC, Melsted P, Gilad Y. Genomic-scale capture and sequencing of endogenous DNA from feces. Molecular Ecology. 2010 Dec; 19(24):5332-44.


DatasetS1.zip : Supplemental material.


R Code:  


  1. CodeNoFiles.tar : Code needed to process and call SNPs, and perform the downstream population genetic analysis (without example data).


  1. CodeForOthers.tar : Example output from the sequencing experiment, as well as the code needed to process and call SNPs, and perform the downstream population genetic analysis.


  1. chrM_assembly.tar.gz : Code used to perform a de novo assembly of the chimpanzee mtDNA sequence.

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